Recent Presentations

  • Highly Charged Proteins and Their Repulsive Interactions in Regulation of Biomolecular Condensation.
    IUPAB 2024, Kyoto, Japan
    Tue, Jun 25th, 2024

  • Multiscale Molecular Dynamics Simulations Reveal the Regulatory Functions of Highly Charged Proteins in Biomolecular Condensation.
    The 24th Annual Meeting of the Protein Science Society of Japan, Sapporo, Japan
    Thr, Jun 13th, 2024

  • Regulation of Biomolecular Condensation Studied with Large-Scale Coarse-Grained Molecular Dynamics Simulations in GENESIS.
    The 61st Annual Meeting of the Biophysical Society of Japan (Symposium: The forefront of biophysical research of liquid-liquid phase separation), Nagoya, Japan
    Wed, Nov 15, 2023

  • Development of Coarse-Grained Models in Molecular Dynamics Software GENESIS and Applications in Biomolecular Condensation Simulation.
    CCP2023 - 34th IUPAP Conference on Computational Physics, Kobe, Japan
    Mon, Aug 07, 2023

  • Highly Charged Proteins and Their Repulsive Interactions Antagonize Biomolecular Condensation.
    The 23rd Annual Meeting of the Protein Science Society of Japan, Nagoya, Japan
    Thr, Jul 06, 2023

  • Development of Coarse-Grained Models in Molecular Dynamics Software GENESIS and Applications in Biomolecular Condensation Simulation.
    Biomolecules and Nanostructures 8, Krakow, Poland
    Thr, Jun 15, 2023

  • Repulsive interaction and secondary structure of highly charged proteins in regulating biomolecular condensation.
    The 67th Biophysical Society Annual Meeting, San Diego, USA
    Mon, Feb 20, 2023

  • Implementation of residue level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.
    The 5th R-CCS International Symposium, Kobe, Japan
    Mon, Feb 06, 2023

  • Secondary structures and repulsive electrostatic interactions of Hero proteins in regulating biomolecular condensation.
    The 2nd BIE Workshop, Yokohama, Japan
    Thr, Jan 19, 2023

  • Implementation of residue level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.
    The 36th Molecular Simulation Symposium, Tokyo, Japan
    Wed, Dec 07, 2022

  • Multi-scale molecular dynamics study of repulsive interactions in regulating biomolecular condensation.
    The 32nd Tokyo RNA Club, RIKEN Symposium, Tokyo, Japan
    Sat, Nov 12, 2022

  • Implementation of residue-level coarse-grained models in GENESIS and applications of multi-scale simulations on Fugaku to study biomolecular condensates.
    The 238th R-CCS Cafe, Online, Japan
    Mon, Nov 07, 2022

  • Molecular dynamics study of phase behaviors of heat-resistant obscure proteins and their anti-aggregation functions.
    The 60th Annual Meeting of the Biophysical Society of Japan, Hakodate, Japan
    Wed, Sep 28, 2022

  • Repulsive interactions in regulating biomolecular condensation.
    The 2nd Non-domain Biopolymer Project Meeting, Tokyo, Japan
    Tue, Sep 20, 2022

  • Residue-level coarse-grained simulations in GENESIS and applications to biological systems.
    RIKEN BDR Symposium 2022, Online
    Wed, Mar 02, 2022

  • Implementation of residue level coarse-grained models for biomolecules in GENESIS.
    The 13th JLESC Workshop, Online
    Thr, Dec 16, 2021

  • Implementation of residue level coarse-grained models in GENESIS.
    The 59th Annual Meeting of the Biophysical Society of Japan, Sendai, Japan
    Thr, Nov 25, 2021

  • Phase behavior of transcription factors studied with molecular dynamics simulations.
    The 8th HPCI System Research Project Report Meeting, Online
    Fri, Oct 29, 2021

  • A singularity-free torsion angle potential for coarse-grained molecular dynamics simulations.
    The 58th Annual Meeting of the Biophysical Society of Japan, Gunma, Japan
    Wed, Sep 16, 2020

  • Allostery of Nucleosomal DNA for Transcription Factor Binding.
    The 57th Annual Meeting of the Biophysical Society of Japan (Symposium: Integrative approaches towards understanding of gene expression), Miyazaki, Japan
    Tue, Sep 24, 2019

  • Interaction between transcription factors and the nucleosome studied by molecular dynamics simulations.
    Workshop: Trends in Computational Molecular Biophysics, Kanazawa, Japan
    Sat, Nov 3, 2018

  • Investigating Genome Organization and Regulation with Molecular Dynamics Simulations.
    LSACJ 2018: Intelligent Medicine, Intellectual Research, Osaka, Japan
    Sun, Oct 21, 2018

  • Combinatorial DNA Binding of Sox/Oct Transcription Factors Studied with Molecular Dynamics Simulations.
    The 56th Annual Meeting of the Biophysical Society of Japan, Okayama, Japan
    Sun, Sep 16, 2018

  • Investigating Genome Organization and Regulation with Coarse-Grained Molecular Simulations.
    The 56th Annual Meeting of the Biophysical Society of Japan (Symposium: Mechanism of Biomolecular Dynamics and Function Revealed by Multiscale Physics), Okayama, Japan
    Sun, Sep 16, 2018

  • Modeling the Specificity of Protein-DNA Interactions from High-Throughput Experiments.
    The 55th Annual Meeting of the Biophysical Society of Japan, Kumamoto, Japan
    Tue, Sep 19, 2017

  • Interplay of nucleosome dynamics and protein target search on DNA.
    CSRC Workshop on DNA Chromosome Structure and Dynamics, Beijing, China
    Sat, Jul 15, 2017

  • Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics.
    APS March Meeting 2017, New Orleans, Louisiana, USA
    Wed, Mar 15, 2017

  • Sequence-specific protein-DNA interactions for molecular dynamics simulations modeled by Position Weight Matrix.
    The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
    Wed, Mar 8, 2017

  • Modeling the specificity of protein-DNA interactions: an integration of Position Weight Matrix into coarse grained molecular dynamics simulations.
    The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
    Wed, Mar 8, 2017

  • Sequence-specific protein-DNA interactions for molecular dynamics simulations modeled by Position Weight Matrix.
    The 54th Annual Meeting of the Biophysical Society of Japan, Tsukuba, Japan
    Sun, Nov 27, 2016

  • Dynamic coupling among protein binding, sliding, and DNA bending revealed by molecular dynamics.
    The 53rd Annual Meeting of the Biophysical Society of Japan, Kanazawa, Japan
    Wed, Sep 23, 2015

  • HU binding coupled bending of double stranded DNA.
    The 3rd Symposium of Soft Molecular Systems, Tokyo, Japan
    Sat, Jul 11, 2015