Invited Talks
Modulation of Structure and Dynamics in Biomolecular Condensates Revealed by Large-Scale Molecular Dynamics Simulations.
The 63rd Annual Meeting of the Biophysical Society of Japan (Symposium: Towards the Elucidation of Structure of Meso-entangled Bodies through the Integration of Computational and Experimental Approaches), Nara, Japan
Thr, Sep 25, 2025High-Performance Coarse-Grained MD: Development and Applications for Protein Dynamics and Function in Biomolecular Condensates.
The 25th Annual Meeting of the Protein Science Society of Japan (Young Scientist Award Talk), Himeji, Japan
Thr, Jun 19, 2025Developments and Applications in Multiscale Molecular Dynamics Simulations for Biomolecular Condensation Using GENESIS.
HPCI Consortium Computational Science Forum, Online
Fri, Mar 22, 2024Regulation of Biomolecular Condensation Studied with Large-Scale Coarse-Grained Molecular Dynamics Simulations in GENESIS.
The 61st Annual Meeting of the Biophysical Society of Japan (Symposium: The forefront of biophysical research of liquid-liquid phase separation), Nagoya, Japan
Wed, Nov 15, 2023Multi-scale molecular dynamics study of repulsive interactions in regulating biomolecular condensation.
The 32nd Tokyo RNA Club, RIKEN Symposium, Tokyo, Japan
Sat, Nov 12, 2022Allostery of Nucleosomal DNA for Transcription Factor Binding.
The 57th Annual Meeting of the Biophysical Society of Japan (Symposium: Integrative approaches towards understanding of gene expression), Miyazaki, Japan
Tue, Sep 24, 2019Investigating Genome Organization and Regulation with Coarse-Grained Molecular Simulations.
The 56th Annual Meeting of the Biophysical Society of Japan (Symposium: Mechanism of Biomolecular Dynamics and Function Revealed by Multiscale Physics), Okayama, Japan
Sun, Sep 16, 2018Interplay of nucleosome dynamics and protein target search on DNA.
CSRC Workshop on DNA Chromosome Structure and Dynamics, Beijing, China
Sat, Jul 15, 2017
Oral Presentations
Large-scale Molecular Dynamics Simulations of Multicomponent Biomolecular Condensation Reveals a Regulatory Mechanism by Highly Charged Proteins.
The 38th Molecular Simulation Symposium, Himeji, Japan
Wed, Dec 4, 2024Implementation of residue level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.
The 36th Molecular Simulation Symposium, Tokyo, Japan
Wed, Dec 07, 2022Interaction between transcription factors and the nucleosome studied by molecular dynamics simulations.
Workshop: Trends in Computational Molecular Biophysics, Kanazawa, Japan
Sat, Nov 3, 2018Investigating Genome Organization and Regulation with Molecular Dynamics Simulations.
LSACJ 2018: Intelligent Medicine, Intellectual Research, Osaka, Japan
Sun, Oct 21, 2018Modeling the Specificity of Protein-DNA Interactions from High-Throughput Experiments.
The 55th Annual Meeting of the Biophysical Society of Japan, Kumamoto, Japan
Tue, Sep 19, 2017Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics.
APS March Meeting 2017, New Orleans, Louisiana, USA
Wed, Mar 15, 2017Modeling the specificity of protein-DNA interactions: an integration of Position Weight Matrix into coarse grained molecular dynamics simulations.
The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
Wed, Mar 8, 2017Dynamic coupling among protein binding, sliding, and DNA bending revealed by molecular dynamics.
The 53rd Annual Meeting of the Biophysical Society of Japan, Kanazawa, Japan
Wed, Sep 23, 2015
Poster Presentations
Large-Scale Coarse-Grained Molecular Dynamics Simulations of Biomolecular Condensation.
The 12th HPCI System Research Project Report Meeting, Tokyo, Japan
Fri, Oct 24, 2025Pushing the Limits of LLPS Simulations: From Residue-Level Details to Micron-Scale Condensates.
HFSP Science Summit Japan 2025, Tokyo, Japan
Thr, Oct 2, 2025Regulating Biomolecular Condensation: Insights from Multi-Scale Simulations of Hero11 and TDP43 Interactions.
ACS Fall 2024, Denver, USA
Tue, Aug 20, 2024Highly Charged Proteins and Their Repulsive Interactions in Regulation of Biomolecular Condensation.
IUPAB 2024, Kyoto, Japan
Tue, Jun 25, 2024Multiscale Molecular Dynamics Simulations Reveal the Regulatory Functions of Highly Charged Proteins in Biomolecular Condensation.
The 24th Annual Meeting of the Protein Science Society of Japan, Sapporo, Japan
Thr, Jun 13, 2024Large Scale Molecular Dynamics Simulations of TDP-43 and Hero11 Protein Condensates.
The 6th R-CCS International Symposium, Kobe, Japan
Mon, Jan 29, 2024Development of Coarse-Grained Models in Molecular Dynamics Software GENESIS and Applications in Biomolecular Condensation Simulation.
CCP2023 - 34th IUPAP Conference on Computational Physics, Kobe, Japan
Mon, Aug 07, 2023Highly Charged Proteins and Their Repulsive Interactions Antagonize Biomolecular Condensation.
The 23rd Annual Meeting of the Protein Science Society of Japan, Nagoya, Japan
Thr, Jul 06, 2023Development of Coarse-Grained Models in Molecular Dynamics Software GENESIS and Applications in Biomolecular Condensation Simulation.
Biomolecules and Nanostructures 8, Krakow, Poland
Thr, Jun 15, 2023Repulsive interaction and secondary structure of highly charged proteins in regulating biomolecular condensation.
The 67th Biophysical Society Annual Meeting, San Diego, USA
Mon, Feb 20, 2023Implementation of residue level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.
The 5th R-CCS International Symposium, Kobe, Japan
Mon, Feb 06, 2023Molecular dynamics study of phase behaviors of heat-resistant obscure proteins and their anti-aggregation functions.
The 60th Annual Meeting of the Biophysical Society of Japan, Hakodate, Japan
Wed, Sep 28, 2022Residue-level coarse-grained simulations in GENESIS and applications to biological systems.
RIKEN BDR Symposium 2022, Online
Wed, Mar 02, 2022Implementation of residue level coarse-grained models for biomolecules in GENESIS.
The 13th JLESC Workshop, Online
Thr, Dec 16, 2021Implementation of residue level coarse-grained models in GENESIS.
The 59th Annual Meeting of the Biophysical Society of Japan, Sendai, Japan
Thr, Nov 25, 2021Phase behavior of transcription factors studied with molecular dynamics simulations.
The 8th HPCI System Research Project Report Meeting, Online
Fri, Oct 29, 2021A singularity-free torsion angle potential for coarse-grained molecular dynamics simulations.
The 58th Annual Meeting of the Biophysical Society of Japan, Gunma, Japan
Wed, Sep 16, 2020Combinatorial DNA Binding of Sox/Oct Transcription Factors Studied with Molecular Dynamics Simulations.
The 56th Annual Meeting of the Biophysical Society of Japan, Okayama, Japan
Sun, Sep 16, 2018Sequence-specific protein-DNA interactions for molecular dynamics simulations modeled by Position Weight Matrix.
The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
Wed, Mar 8, 2017Sequence-specific protein-DNA interactions for molecular dynamics simulations modeled by Position Weight Matrix.
The 54th Annual Meeting of the Biophysical Society of Japan, Tsukuba, Japan
Sun, Nov 27, 2016