Recent Presentations

• Regulation of Biomolecular Condensation Studied with Large-Scale Coarse-Grained Molecular Dynamics Simulations in GENESIS.
  The 61st Annual Meeting of the Biophysical Society of Japan (Symposium: The forefront of biophysical research of liquid-liquid phase separation), Nagoya, Japan
  Wed, Nov 15, 2023

• Development of Coarse-Grained Models in Molecular Dynamics Software GENESIS and Applications in Biomolecular Condensation Simulation.
  CCP2023 - 34th IUPAP Conference on Computational Physics, Kobe, Japan
  Mon, Aug 07, 2023

• Highly Charged Proteins and Their Repulsive Interactions Antagonize Biomolecular Condensation.
  The 23rd Annual Meeting of the Protein Science Society of Japan, Nagoya, Japan
  Thr, Jul 06, 2023

• Development of Coarse-Grained Models in Molecular Dynamics Software GENESIS and Applications in Biomolecular Condensation Simulation.
  Biomolecules and Nanostructures 8, Krakow, Poland
  Thr, Jun 15, 2023

• Repulsive interaction and secondary structure of highly charged proteins in regulating biomolecular condensation.
  The 67th Biophysical Society Annual Meeting, San Diego, USA
  Mon, Feb 20, 2023

• Implementation of residue level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.
  The 5th R-CCS International Symposium, Kobe, Japan
  Mon, Feb 06, 2023

• Secondary structures and repulsive electrostatic interactions of Hero proteins in regulating biomolecular condensation.
  The 2nd BIE Workshop, Yokohama, Japan
  Thr, Jan 19, 2023

• Implementation of residue level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.
  The 36th Molecular Simulation Symposium, Tokyo, Japan
  Wed, Dec 07, 2022

• Multi-scale molecular dynamics study of repulsive interactions in regulating biomolecular condensation.
  The 32nd Tokyo RNA Club, RIKEN Symposium, Tokyo, Japan
  Sat, Nov 12, 2022

• Implementation of residue-level coarse-grained models in GENESIS and applications of multi-scale simulations on Fugaku to study biomolecular condensates.
  The 238th R-CCS Cafe, Online, Japan
  Mon, Nov 07, 2022

• Molecular dynamics study of phase behaviors of heat-resistant obscure proteins and their anti-aggregation functions.
  The 60th Annual Meeting of the Biophysical Society of Japan, Hakodate, Japan
  Wed, Sep 28, 2022

• Repulsive interactions in regulating biomolecular condensation.
  The 2nd Non-domain Biopolymer Project Meeting, Tokyo, Japan
  Tue, Sep 20, 2022

• Residue-level coarse-grained simulations in GENESIS and applications to biological systems.
  RIKEN BDR Symposium 2022, Online
  Wed, Mar 02, 2022

• Implementation of residue level coarse-grained models for biomolecules in GENESIS.
  The 13th JLESC Workshop, Online
  Thr, Dec 16, 2021

• Implementation of residue level coarse-grained models in GENESIS.
  The 59th Annual Meeting of the Biophysical Society of Japan, Sendai, Japan
  Thr, Nov 25, 2021

• Phase behavior of transcription factors studied with molecular dynamics simulations.
  The 8th HPCI System Research Project Report Meeting, Online
  Fri, Oct 29, 2021

• A singularity-free torsion angle potential for coarse-grained molecular dynamics simulations.
  The 58th Annual Meeting of the Biophysical Society of Japan, Gunma, Japan
  Wed, Sep 16, 2020

• Allostery of Nucleosomal DNA for Transcription Factor Binding.
  The 57th Annual Meeting of the Biophysical Society of Japan (Symposium: Integrative approaches towards understanding of gene expression), Miyazaki, Japan
  Tue, Sep 24, 2019

• Interaction between transcription factors and the nucleosome studied by molecular dynamics simulations.
  Workshop: Trends in Computational Molecular Biophysics, Kanazawa, Japan
  Sat, Nov 3, 2018

• Investigating Genome Organization and Regulation with Molecular Dynamics Simulations.
  LSACJ 2018: Intelligent Medicine, Intellectual Research, Osaka, Japan
  Sun, Oct 21, 2018

• Combinatorial DNA Binding of Sox/Oct Transcription Factors Studied with Molecular Dynamics Simulations.
  The 56th Annual Meeting of the Biophysical Society of Japan, Okayama, Japan
  Sun, Sep 16, 2018

• Investigating Genome Organization and Regulation with Coarse-Grained Molecular Simulations.
  The 56th Annual Meeting of the Biophysical Society of Japan (Symposium: Mechanism of Biomolecular Dynamics and Function Revealed by Multiscale Physics), Okayama, Japan
  Sun, Sep 16, 2018

• Modeling the Specificity of Protein-DNA Interactions from High-Throughput Experiments.
  The 55th Annual Meeting of the Biophysical Society of Japan, Kumamoto, Japan
  Tue, Sep 19, 2017

• Interplay of nucleosome dynamics and protein target search on DNA.
  CSRC Workshop on DNA Chromosome Structure and Dynamics, Beijing, China
  Sat, Jul 15, 2017

• Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics.
  APS March Meeting 2017, New Orleans, Louisiana, USA
  Wed, Mar 15, 2017

• Sequence-specific protein-DNA interactions for molecular dynamics simulations modeled by Position Weight Matrix.
  The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
  Wed, Mar 8, 2017

• Modeling the specificity of protein-DNA interactions: an integration of Position Weight Matrix into coarse grained molecular dynamics simulations.
  The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
  Wed, Mar 8, 2017

• Sequence-specific protein-DNA interactions for molecular dynamics simulations modeled by Position Weight Matrix.
  The 54th Annual Meeting of the Biophysical Society of Japan, Tsukuba, Japan
  Sun, Nov 27, 2016

• Dynamic coupling among protein binding, sliding, and DNA bending revealed by molecular dynamics.
  The 53rd Annual Meeting of the Biophysical Society of Japan, Kanazawa, Japan
  Wed, Sep 23, 2015

• HU binding coupled bending of double stranded DNA.
  The 3rd Symposium of Soft Molecular Systems, Tokyo, Japan
  Sat, Jul 11, 2015