Recent Presentations
-
Repulsive interaction and secondary structure of highly charged proteins in regulating biomolecular condensation.
The 67th Biophysical Society Annual Meeting, San Diego, USA
Mon, Feb 20, 2023 -
Implementation of residue level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.
The 5th R-CCS International Symposium, Kobe, Japan
Mon, Feb 06, 2023 -
Secondary structures and repulsive electrostatic interactions of Hero proteins in regulating biomolecular condensation.
The 2nd BIE Workshop, Yokohama, Japan
Thr, Jan 19, 2023 -
Implementation of residue level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.
The 36th Molecular Simulation Symposium, Tokyo, Japan
Wed, Dec 07, 2022 -
Multi-scale molecular dynamics study of repulsive interactions in regulating biomolecular condensation.
The 32nd Tokyo RNA Club, RIKEN Symposium, Tokyo, Japan
Sat, Nov 12, 2022 -
Implementation of residue-level coarse-grained models in GENESIS and applications of multi-scale simulations on Fugaku to study biomolecular condensates.
The 238th R-CCS Cafe, Online, Japan
Mon, Nov 07, 2022 -
Molecular dynamics study of phase behaviors of heat-resistant obscure proteins and their anti-aggregation functions.
The 60th Annual Meeting of the Biophysical Society of Japan, Hakodate, Japan
Wed, Sep 28, 2022 -
Repulsive interactions in regulating biomolecular condensation.
The 2nd Non-domain Biopolymer Project Meeting, Tokyo, Japan
Tue, Sep 20, 2022 -
Residue-level coarse-grained simulations in GENESIS and applications to biological systems.
RIKEN BDR Symposium 2022, Online
Wed, Mar 02, 2022 -
Implementation of residue level coarse-grained models for biomolecules in GENESIS.
The 13th JLESC Workshop, Online
Thr, Dec 16, 2021 -
Implementation of residue level coarse-grained models in GENESIS.
The 59th Annual Meeting of the Biophysical Society of Japan, Sendai, Japan
Thr, Nov 25, 2021 -
Phase behavior of transcription factors studied with molecular dynamics simulations.
The 8th HPCI System Research Project Report Meeting, Online
Fri, Oct 29, 2021 -
A singularity-free torsion angle potential for coarse-grained molecular dynamics simulations.
The 58th Annual Meeting of the Biophysical Society of Japan, Gunma, Japan
Wed, Sep 16, 2020 -
Allostery of Nucleosomal DNA for Transcription Factor Binding.
The 57th Annual Meeting of the Biophysical Society of Japan (Symposium: Integrative approaches towards understanding of gene expression), Miyazaki, Japan
Tue, Sep 24, 2019 -
Interaction between transcription factors and the nucleosome studied by molecular dynamics simulations.
Workshop: Trends in Computational Molecular Biophysics, Kanazawa, Japan
Sat, Nov 3, 2018 -
Investigating Genome Organization and Regulation with Molecular Dynamics Simulations.
LSACJ 2018: Intelligent Medicine, Intellectual Research, Osaka, Japan
Sun, Oct 21, 2018 -
Combinatorial DNA Binding of Sox/Oct Transcription Factors Studied with Molecular Dynamics Simulations.
The 56th Annual Meeting of the Biophysical Society of Japan, Okayama, Japan
Sun, Sep 16, 2018 -
Investigating Genome Organization and Regulation with Coarse-Grained Molecular Simulations.
The 56th Annual Meeting of the Biophysical Society of Japan (Symposium: Mechanism of Biomolecular Dynamics and Function Revealed by Multiscale Physics), Okayama, Japan
Sun, Sep 16, 2018 -
Modeling the Specificity of Protein-DNA Interactions from High-Throughput Experiments.
The 55th Annual Meeting of the Biophysical Society of Japan, Kumamoto, Japan
Tue, Sep 19, 2017 -
Interplay of nucleosome dynamics and protein target search on DNA.
CSRC Workshop on DNA Chromosome Structure and Dynamics, Beijing, China
Sat, Jul 15, 2017 -
Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics.
APS March Meeting 2017, New Orleans, Louisiana, USA
Wed, Mar 15, 2017 -
Sequence-specific protein-DNA interactions for molecular dynamics simulations modeled by Position Weight Matrix.
The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
Wed, Mar 8, 2017 -
Modeling the specificity of protein-DNA interactions: an integration of Position Weight Matrix into coarse grained molecular dynamics simulations.
The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
Wed, Mar 8, 2017 -
Sequence-specific protein-DNA interactions for molecular dynamics simulations modeled by Position Weight Matrix.
The 54th Annual Meeting of the Biophysical Society of Japan, Tsukuba, Japan
Sun, Nov 27, 2016 -
Dynamic coupling among protein binding, sliding, and DNA bending revealed by molecular dynamics.
The 53rd Annual Meeting of the Biophysical Society of Japan, Kanazawa, Japan
Wed, Sep 23, 2015 -
HU binding coupled bending of double stranded DNA.
The 3rd Symposium of Soft Molecular Systems, Tokyo, Japan
Sat, Jul 11, 2015