Recent Presentations

  • Repulsive interaction and secondary structure of highly charged proteins in regulating biomolecular condensation.
    The 67th Biophysical Society Annual Meeting, San Diego, USA
    Mon, Feb 20, 2023

  • Implementation of residue level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.
    The 5th R-CCS International Symposium, Kobe, Japan
    Mon, Feb 06, 2023

  • Secondary structures and repulsive electrostatic interactions of Hero proteins in regulating biomolecular condensation.
    The 2nd BIE Workshop, Yokohama, Japan
    Thr, Jan 19, 2023

  • Implementation of residue level coarse-grained models in GENESIS for large-scale molecular dynamics simulations.
    The 36th Molecular Simulation Symposium, Tokyo, Japan
    Wed, Dec 07, 2022

  • Multi-scale molecular dynamics study of repulsive interactions in regulating biomolecular condensation.
    The 32nd Tokyo RNA Club, RIKEN Symposium, Tokyo, Japan
    Sat, Nov 12, 2022

  • Implementation of residue-level coarse-grained models in GENESIS and applications of multi-scale simulations on Fugaku to study biomolecular condensates.
    The 238th R-CCS Cafe, Online, Japan
    Mon, Nov 07, 2022

  • Molecular dynamics study of phase behaviors of heat-resistant obscure proteins and their anti-aggregation functions.
    The 60th Annual Meeting of the Biophysical Society of Japan, Hakodate, Japan
    Wed, Sep 28, 2022

  • Repulsive interactions in regulating biomolecular condensation.
    The 2nd Non-domain Biopolymer Project Meeting, Tokyo, Japan
    Tue, Sep 20, 2022

  • Residue-level coarse-grained simulations in GENESIS and applications to biological systems.
    RIKEN BDR Symposium 2022, Online
    Wed, Mar 02, 2022

  • Implementation of residue level coarse-grained models for biomolecules in GENESIS.
    The 13th JLESC Workshop, Online
    Thr, Dec 16, 2021

  • Implementation of residue level coarse-grained models in GENESIS.
    The 59th Annual Meeting of the Biophysical Society of Japan, Sendai, Japan
    Thr, Nov 25, 2021

  • Phase behavior of transcription factors studied with molecular dynamics simulations.
    The 8th HPCI System Research Project Report Meeting, Online
    Fri, Oct 29, 2021

  • A singularity-free torsion angle potential for coarse-grained molecular dynamics simulations.
    The 58th Annual Meeting of the Biophysical Society of Japan, Gunma, Japan
    Wed, Sep 16, 2020

  • Allostery of Nucleosomal DNA for Transcription Factor Binding.
    The 57th Annual Meeting of the Biophysical Society of Japan (Symposium: Integrative approaches towards understanding of gene expression), Miyazaki, Japan
    Tue, Sep 24, 2019

  • Interaction between transcription factors and the nucleosome studied by molecular dynamics simulations.
    Workshop: Trends in Computational Molecular Biophysics, Kanazawa, Japan
    Sat, Nov 3, 2018

  • Investigating Genome Organization and Regulation with Molecular Dynamics Simulations.
    LSACJ 2018: Intelligent Medicine, Intellectual Research, Osaka, Japan
    Sun, Oct 21, 2018

  • Combinatorial DNA Binding of Sox/Oct Transcription Factors Studied with Molecular Dynamics Simulations.
    The 56th Annual Meeting of the Biophysical Society of Japan, Okayama, Japan
    Sun, Sep 16, 2018

  • Investigating Genome Organization and Regulation with Coarse-Grained Molecular Simulations.
    The 56th Annual Meeting of the Biophysical Society of Japan (Symposium: Mechanism of Biomolecular Dynamics and Function Revealed by Multiscale Physics), Okayama, Japan
    Sun, Sep 16, 2018

  • Modeling the Specificity of Protein-DNA Interactions from High-Throughput Experiments.
    The 55th Annual Meeting of the Biophysical Society of Japan, Kumamoto, Japan
    Tue, Sep 19, 2017

  • Interplay of nucleosome dynamics and protein target search on DNA.
    CSRC Workshop on DNA Chromosome Structure and Dynamics, Beijing, China
    Sat, Jul 15, 2017

  • Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics.
    APS March Meeting 2017, New Orleans, Louisiana, USA
    Wed, Mar 15, 2017

  • Sequence-specific protein-DNA interactions for molecular dynamics simulations modeled by Position Weight Matrix.
    The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
    Wed, Mar 8, 2017

  • Modeling the specificity of protein-DNA interactions: an integration of Position Weight Matrix into coarse grained molecular dynamics simulations.
    The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
    Wed, Mar 8, 2017

  • Sequence-specific protein-DNA interactions for molecular dynamics simulations modeled by Position Weight Matrix.
    The 54th Annual Meeting of the Biophysical Society of Japan, Tsukuba, Japan
    Sun, Nov 27, 2016

  • Dynamic coupling among protein binding, sliding, and DNA bending revealed by molecular dynamics.
    The 53rd Annual Meeting of the Biophysical Society of Japan, Kanazawa, Japan
    Wed, Sep 23, 2015

  • HU binding coupled bending of double stranded DNA.
    The 3rd Symposium of Soft Molecular Systems, Tokyo, Japan
    Sat, Jul 11, 2015