Recent Presentations

  • A singularity-free torsion angle potential for coarse-grained molecular dynamics simulations.
    The 58th Annual Meeting of the Biophysical Society of Japan, Gunma, Japan
    Wed, Sep 16, 2020

  • Allostery of Nucleosomal DNA for Transcription Factor Binding.
    The 57th Annual Meeting of the Biophysical Society of Japan (Symposium: Integrative approaches towards understanding of gene expression), Miyazaki, Japan
    Tue, Sep 24, 2019

  • Interaction between transcription factors and the nucleosome studied by molecular dynamics simulations.
    Workshop: Trends in Computational Molecular Biophysics, Kanazawa, Japan
    Sat, Nov 3, 2018

  • Investigating Genome Organization and Regulation with Molecular Dynamics Simulations.
    LSACJ 2018: Intelligent Medicine, Intellectual Research, Osaka, Japan
    Sun, Oct 21, 2018

  • Combinatorial DNA Binding of Sox/Oct Transcription Factors Studied with Molecular Dynamics Simulations.
    The 56th Annual Meeting of the Biophysical Society of Japan, Okayama, Japan
    Sun, Sep 16, 2018

  • Investigating Genome Organization and Regulation with Coarse-Grained Molecular Simulations.
    The 56th Annual Meeting of the Biophysical Society of Japan (Symposium: Mechanism of Biomolecular Dynamics and Function Revealed by Multiscale Physics), Okayama, Japan
    Sun, Sep 16, 2018

  • Modeling the Specificity of Protein-DNA Interactions from High-Throughput Experiments.
    The 55th Annual Meeting of the Biophysical Society of Japan, Kumamoto, Japan
    Tue, Sep 19, 2017

  • Interplay of nucleosome dynamics and protein target search on DNA.
    CSRC Workshop on DNA Chromosome Structure and Dynamics, Beijing, China
    Sat, Jul 15, 2017

  • Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics.
    APS March Meeting 2017, New Orleans, Louisiana, USA
    Wed, Mar 15, 2017

  • Sequence-Specific Protein-DNA Interactions for Molecular Dynamics Simulations Modeled by Position Weight Matrix.
    The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
    Wed, Mar 8, 2017

  • Modeling the Specificity of Protein-DNA Interactions: An Integration of Position Weight Matrix into Coarse Grained Molecular Dynamics Simulations.
    The 5th International Symposium of the Mathematics on Chromatin Live Dynamics, Hiroshima, Japan
    Wed, Mar 8, 2017

  • Sequence-Specific Protein-DNA Interactions for Molecular Dynamics Simulations Modeled by Position Weight Matrix.
    The 54th Annual Meeting of the Biophysical Society of Japan, Tsukuba, Japan
    Sun, Nov 27, 2016

  • Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics.
    The 53rd Annual Meeting of the Biophysical Society of Japan, Kanazawa, Japan
    Wed, Sep 23, 2015

  • HU Binding Coupled Bending of Double Stranded DNA.
    The 3rd Symposium of Soft Molecular Systems, Tokyo, Japan
    Sat, Jul 11, 2015