Recent & Upcoming Presentations

2020

• A singularity-free torsion angle potential for coarse-grained molecular dynamics simulations

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2019

• Allostery of Nucleosomal DNA for Transcription Factor Binding

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2018

• Binding and Diffusion of HMG Proteins on DNA Studied by Molecular Dynamics Simulations

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• Interaction between transcription factors and the nucleosome studied by molecular dynamics simulations

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• Investigating Genome Organization and Regulation with Molecular Dynamics Simulations

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• Combinatorial DNA Binding of Sox/Oct Transcription Factors Studied with Molecular Dynamics Simulations

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• Investigating Genome Organization and Regulation with Coarse-Grained Molecular Simulations

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2017

• Modeling the Specificity of Protein-DNA Interactions from High-Throughput Experiments

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• Interplay of nucleosome dynamics and protein target search on DNA

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• Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics

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• Sequence-Specific Protein-DNA Interactions for Molecular Dynamics Simulations Modeled by Position Weight Matrix

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• Modeling the Specificity of Protein-DNA Interactions: An Integration of Position Weight Matrix into Coarse Grained Molecular Dynamics Simulations

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2016

• Sequence-Specific Protein-DNA Interactions for Molecular Dynamics Simulations Modeled by Position Weight Matrix

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2015

• Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics

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• HU Binding Coupled Bending of Double Stranded DNA

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