Recent & Upcoming Presentations

2018

  • Interaction between transcription factors and the nucleosome studied by molecular dynamics simulations

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  • Investigating Genome Organization and Regulation with Molecular Dynamics Simulations

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  • Combinatorial DNA Binding of Sox/Oct Transcription Factors Studied with Molecular Dynamics Simulations

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  • Investigating Genome Organization and Regulation with Coarse-Grained Molecular Simulations

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2017

  • Modeling the Specificity of Protein-DNA Interactions from High-Throughput Experiments

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  • Interplay of nucleosome dynamics and protein target search on DNA

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  • Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics

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  • Modeling the Specificity of Protein-DNA Interactions: An Integration of Position Weight Matrix into Coarse Grained Molecular Dynamics Simulations

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2016

  • Sequence-Specific Protein-DNA Interactions for Molecular Dynamics Simulations Modeled by Position Weight Matrix

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2015

  • Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics

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  • HU Binding Coupled Bending of Double Stranded DNA

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