I made a pdf file for taking notes and making plans (手帳 in Japanese) with LaTeX.
I am currently a postdoctoral researcher in the Computational Biophysics Research Team at RIKEN. I have started my current job since May, 2019. My research interests include functional mechanisms of DNA-protein binding, multi-scale organization of the genome, liquid-liquid phase separation in gene expression, and modeling of biomolecules in molecular dynamics (MD) simulations. Besides, I write code for MD softwares GENESIS and CafeMol.
I used to be a free software fanatic (FSF), with up to 10+ years of using various Linux distributions. But now I prefer to use many paid softwares, if available, to save my time and to focus more on truely interesting things.
In order to participate in a sport without any physical contact, I started practicing the Rubik’s cube from 2009, and I broke the national record for the $2\times 2$ cube in a game in 2010. Unfortunately, I stopped practicing since then.
PhD in Physics, 2014
Nanjing University
BSc in Physics, 2007
Nanjing University
Wed, Sep 16, 2020, The 58th Annual Meeting of the Biophysical Society of Japan
Tue, Sep 24, 2019, The 57th Annual Meeting of the Biophysical Society of Japan (Symposium: Integrative approaches towards understanding of gene expression)
Fri, Dec 21, 2018, Visit to Prof. Kamagata’s group in Tohoku Univ.
I made a pdf file for taking notes and making plans (手帳 in Japanese) with LaTeX.
I made a gif showing COVID19 infection distribution changes in Japan. Nothing new, just a showcase with python.
I recently got this idea that we can show all the basic trigonometric functions and the derivatives in one figure. So I spent some time to plot it with LaTeX.
This is the beginning of teaching my daughter Chinese characters.
Yet another dictionary tool written in python. Allow regex.
My snippets for Emacs yasnippet.
A simple tool to plot information content LOGO for PWM. Image format is svg.
This is a package consisting of several small handy tools for analyzing biomolecule structures (protein, RNA, DNA) and CafeMol MD trajectories.
Simple script to perform RESPAC calculations (including APBS) for coarse-grained protein charge distributions.
My spacemacs configurations (init.el) and additional layer settings.
An Emacs major mode for editing CafeMol input file.