Publications

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Dynamic and Structural Modeling of the Specificity in Protein-DNA Interactions Guided by Binding Assay and Structure Data

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Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations

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DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations

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Dynamic Coupling among Protein Binding, Sliding, and DNA Bending Revealed by Molecular Dynamics

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Modeling Structural Dynamics of Biomolecular Complexes by Coarse-Grained Molecular Simulations

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Atomistic Picture for the Folding Pathway of a Hybrid-1 Type Human Telomeric DNA G-quadruplex

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Localized Frustration and Binding-Induced Conformational Change in Recognition of 5S RNA by TFIIIA Zinc Finger

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Specific Binding of a Short miRNA Sequence by Zinc Knuckles of Lin28: A Molecular Dynamics Simulation Study

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Low Folding Cooperativity of Hp35 Revealed by Single-Molecule Force Spectroscopy and Molecular Dynamics Simulation

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